Submit embedding calculation

` Submit embedding calculation

Welcome to bio_embeddings

Please note that this is a very basic server.

If you have questions, chat with us.

You can find out more about

bio_embeddings

by visiting our GitHub page.

Submit a pipeline job

Pipeline jobs are currently inactive.

Files relevant to the execution of the job.

Sequences in FASTA

CSV file mapping input ids to pipeline ids

The configuration file used for your job

Results from the embed stage

Per-amino-acid embeddings in hdf5

Per-sequence embeddings in hdf5

Results from the extract stage

Secondary structure predicted in three states as FASTA file

Secondary structure predicted in eight states as FASTA file

Disorder predicted in two states as FASTA file

Subcellular localization and membrane/non-membrane predictions per-sequence in CSV

Results from the visualize stage

2D UMAP projection of sequences

Or

Direct jobs

Direct jobs (e.g., getting secondary structure prediction from ProtBert on the fly) are available through PredictProtein and Embed Protein Properties.

In the following, you find the status of the sync workers. If workers are inactive (orange), jobs will not be executed. Blue workers are active and can execute jobs.

ProtT5
ProtT5 Annotations
ProtBert
ProtBert Annotations
SeqVec
SeqVec Annotations

Programmatic access is available through the API.

Made by Christian Dallago & Konstantin Schütze.

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